Chromomap package
WebMar 18, 2024 · The chromoMap package contains the following man pages: chromoMap chromoMap-shiny. rdrr.io Find an R package R language docs Run R in your browser. chromoMap Interactive Genomic Visualization of Biological Data. Package index. Search the chromoMap package. Vignettes. chromoMap v0.4.1 Documentation (R package) ... WebChromoMap takes tab-delimited files (BED like) or alternatively R objects to specify the genomic co-ordinates of the chromosomes and elements to annotate. Rendered chromosomes are composed of continuous windows of a given range, which, on hover, display detailed information about the elements annotated within that range.
Chromomap package
Did you know?
WebAug 1, 2024 · CRAN - Package chromoMap chromoMap: Interactive Visualization and Mapping of Human Chromosomes Provides interactive, configurable and elegant … WebOct 3, 2024 · chromoMap (list (chr.data),list (anno.data), # labelling arguments labels = T, label_font = 12, label_angle = -55, # group annotation arguments data_based_color_map = T, data_type = "categorical", data_colors = list (c (col.set)), # for the legend legend = T, #adjusting the legend along y-axis lg_y = 250, #increasing canvas width for legend …
WebGitHub - cran/chromoMap: This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data cran / chromoMap Public Notifications Fork 4 Star 6 … WebJan 11, 2024 · ChromoMap can also integrate multi-omics data (genomics, transcriptomics and epigenomics) in relation to their occurrence across chromosomes. ChromoMap …
WebChromote is an R implementation of the Chrome DevTools Protocol. It works with Chrome, Chromium, Opera, Vivaldi, and other browsers based on Chromium. By default it uses Google Chrome (which must already be installed on the system). To use a different browser, see Specifying which browser to use. WebchromoMap in 5mins (presented at Bio-IT World 2024) - YouTube 0:00 / 4:54 chromoMap in 5mins (presented at Bio-IT World 2024) Lakshay Anand 14 subscribers …
WebFeb 20, 2024 · Package ‘chromoMap’ April 1, 2024 Type Package Title Interactive Genomic Visualization of Biological Data Version 0.3.1 Maintainer Lakshay Anand Description Provides interactive, configurable and elegant graphics visualization of the chromo-somes or chromosome regions
WebJan 23, 2024 · Abstract Summary chromoMap is an R package for constructing interactive visualizations of chromosomes/chromosomal regions, and mapping of chromosomal elements (like genes) onto them, of any living organism. The package takes separate tab-delimited files (BED like) to specify the genomic co-ordinates of the chromosomes and … brick and row natchitochesWebStep 1: Install chromoMap App from Docker You need to install Docker before you can install the chromoMap App. Docker is available for all platforms. Once Docker is installed, open your command prompt and get the chromoMap App using the following commands. Copy Step 2: Run the chromoMap App brick and sand calculatorWebMar 18, 2024 · chromoMap: Interactive Genomic Visualization of Biological Data Provides interactive, configurable and elegant graphics visualization of the chromosomes or … covered in fabric vertical blindsWebJan 23, 2024 · Abstract. Summary chromoMap is an R package for constructing interactive visualizations of chromosomes/chromosomal regions, and mapping of chromosomal … brick and sand properties palakkadWebFeb 7, 2024 · Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can … brick and shelbyWebBACKGROUND: The recent advancements in high-throughput sequencing have resulted in the availability of annotated genomes, as well as of multi-omics data for many living organisms. This has increased the need for graphic tools that allow the concurrent visualization of genomes and feature-associated multi-omics data on single publication … covered information definitionWebThe package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documents that can be customized and shared easily. In addition, you can include them in R Markdown or in R 'Shiny' applications. copied from cf-staging / r-chromomap Conda brick and sand patio